PGx Knowledge Assembly

A sample knowledge assembly that uses CPIC and DPWG collections (KnowledgeSets).

Id: pgx-ka

Identifier: ark:pgx-ka

Type: https://kgrid.org/koio#KnowledgeAssembly

Version: v1.0

Date: 2025-05-06

License: license.md

Creator Information

Name: Knowledge Systems Lab, University of Michigan

Affiliation: University of Michigan

Email: kgrid-developers@umich.edu

Website: https://kgrid.org

Knowledge

ks1

Type: https://kgrid.org/koio#KnowledgeSet

Description: Genotype to Phenotype mapping

Knowledge Objects:

ks2

Type: https://kgrid.org/koio#KnowledgeSet

Description: Phenotype to recommendation mapping

ks3

Type: https://kgrid.org/koio#KnowledgeSet

Description: Phenotype to recommendation mapping

Knowledge Objects:

Services

Pain_Medication_Service

Type: https://kgrid.org/koio#Service

Depends on: ks1, ks2

Implemented by:

all-recommendation

Type: https://kgrid.org/koio#Service

Depends on: ks1, ks2, ks3

Implemented by:

Documentation

README.md

PGx-KA readme file.

Document of PGx Knowledge Assembly (koio#KnowledgeAssembly)

PGx-KA Service Documentation

PGx-KA Service Documentation

Document of PGx Knowledge Assembly (koio#KnowledgeAssembly)

Knowledge Object Information Page

Knowledge object information page.

Document of PGx Knowledge Assembly (koio#KnowledgeAssembly)

How to run all recommendation library service tests?

This document includes instruction on how to run all recommendation library service tests.

Document of JavaScript tests written for the all recommendation library service (koio#Test)

How to run all recommendation plugin service tests?

This document includes instruction on how to run all recommendation plugin service tests.

Document of Tests written for the all recommendation plugin service (koio#Test)

Tests

Python pain medication tests written for the pain medication service

These tests are written to test the functionality and correctness of the Python pain medication service of pgx-ka.

Test of Pain_Medication_Service (koio#Service)

JavaScript tests written for the all recommendation library service

These tests are written to test the functionality and correctness of the Javascript allrecommendation library service of pgx-ka.

Test of all-recommendation (koio#Service)

Tests written for the all recommendation plugin service

These tests are written to test the functionality and correctness of the all recommendation plugin service of pgx-ka.

Test of all-recommendation (koio#Service)